Transcript: lnc-FNDC1-3:3

Basic information

LNCipedia transcript ID: lnc-FNDC1-3:3 
LNCipedia gene ID: lnc-FNDC1-3
Ensembl Gene ID: ENSG00000224478
Ensembl Transcript ID: ENST00000642586
Location (hg38): chr6:159094093-159116254
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1269 bp
Exons: 5
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642586.1
Alternative gene names: ENSG00000224478.2; AL356417.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.872 non-coding 
CPAT coding probability 6.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FNDC1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SYTL3-6:1
5.1 lnc-SYTL3-6:1
5.2 lnc-FNDC1-3:3