Transcript: lnc-FOXD4L5-13:2

Basic information

LNCipedia transcript ID: lnc-FOXD4L5-13:2 
LNCipedia gene ID: lnc-FOXD4L5-13
Location (hg38): chr9:63802144-63806025
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2818 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015825; ENST00000417843; ENST00000417843.1; RP11-764K9.1-001; OTTHUMT00000129817.1; NONHSAT131612
Alternative gene names: XLOC_007710; linc-FAM75A7-7; ENSG00000225411; RP11-764K9.1; ENSG00000225411.1; OTTHUMG00000058662.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.7501 non-coding 
CPAT coding probability 6.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD4L5-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM27B-2:1
3.1 lnc-FAM27B-2:1
4.0 lnc-FAM27B-2:1
4.1 lnc-FAM27B-2:1
5.0 lnc-FAM27B-2:1
5.1 lnc-ZFAND5-70:2
5.2 lnc-FOXD4L5-13:2