Transcript: lnc-FOXL1-1:2

Basic information

LNCipedia transcript ID: lnc-FOXL1-1:2 
LNCipedia gene ID: lnc-FOXL1-1
Location (hg38): chr16:86644547-86648306
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2020 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_1384_chr16:86678152-86681912_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.3808 non-coding 
CPAT coding probability 10.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXL1-1:2 no no no no

Available literature

  1. Al-Tassan (2015), A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXL1-1:2
4.0 lnc-FOXL1-1:2
4.1 lnc-FOXL1-1:2
5.0 lnc-FOXL1-1:2
5.1 lnc-FOXL1-1:2
5.2 lnc-FOXL1-1:2