Transcript: lnc-FPGT-5:3

Basic information

LNCipedia transcript ID: lnc-FPGT-5:3 
LNCipedia gene ID: lnc-FPGT-5
Location (hg38): chr1:72765031-72780291
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 593 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT003917; ENST00000418078.2
Alternative gene names: ENSG00000227016.2; RP11-262K1.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.2549 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FPGT-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FPGT-5:3
4.0 lnc-FPGT-5:3
4.1 lnc-FPGT-5:3
5.0 lnc-FPGT-5:3
5.1 lnc-TYW3-12:1
5.2 lnc-FPGT-5:3