Transcript: lnc-FPGT-5:4

Basic information

LNCipedia transcript ID: lnc-FPGT-5:4 
LNCipedia gene ID: lnc-FPGT-5
Ensembl Gene ID: ENSG00000227016
Ensembl Transcript ID: ENST00000418078
Location (hg38): chr1:72765031-72791282
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1382 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418078.3
Alternative gene names: ENSG00000227016.3; RP11-262K1.1; AL583808.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -97.5402 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FPGT-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FPGT-5:4
4.1 lnc-FPGT-5:4
5.0 lnc-FPGT-5:4
5.1 lnc-TYW3-12:2
5.2 lnc-FPGT-5:4