Transcript: FRG1-DT:27

Basic information

LNCipedia transcript ID: FRG1-DT:27 
HGNC Gene Symbol: FRG1-DT    
HGNC Full Gene Name: FRG1 divergent transcript
Ensembl Gene ID: ENSG00000245685
Ensembl Transcript ID: ENST00000508156
Location (hg38): chr4:189821481-189939741
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508156; ENST00000508156.1; AF146191.4-003; OTTHUMT00000361303.1; NONHSAT099801; ENST00000508156.5
Alternative gene names: ENSG00000245685; AF146191.4; ENSG00000245685.2; OTTHUMG00000160585.3; ENSG00000245685.6; AF250324.1; FRG1-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.85 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FRG1-DT:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRG2-2:3
3.1 lnc-FRG2-2:3
4.0 lnc-FRG2-2:3
4.1 lnc-FRG2-2:3
5.0 lnc-FRG2-2:3
5.1 FRG1-DT:13
5.2 FRG1-DT:27