Transcript: lnc-GNAT3-2:1

Basic information

LNCipedia transcript ID: lnc-GNAT3-2:1 
LNCipedia gene ID: lnc-GNAT3-2
Ensembl Gene ID: ENSG00000234223
Ensembl Transcript ID: ENST00000447198
Location (hg38): chr7:80246409-80312456
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013202; ENST00000447198; ENST00000447198.2; AC003988.1-001; OTTHUMT00000344219.2; NONHSAT121735
Alternative gene names: XLOC_006508; linc-MAGI2-2; ENSG00000234223; AC003988.1; ENSG00000234223.2; OTTHUMG00000156443.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.811 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNAT3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNAT3-2:1
3.1 lnc-GNAT3-2:1
4.0 lnc-GNAT3-2:1
4.1 lnc-GNAT3-2:1
5.0 lnc-GNAT3-2:1
5.1 lnc-SEMA3C-6:1
5.2 lnc-GNAT3-2:1