Transcript: lnc-GPR101-1:1

Basic information

LNCipedia transcript ID: lnc-GPR101-1:1 
LNCipedia gene ID: lnc-GPR101-1
Ensembl Gene ID: ENSG00000224765
Ensembl Transcript ID: ENST00000442841
Location (hg38): chrX:137560669-137564387
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 586 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017095; ENST00000442841.1; RP1-137H15.2-002; OTTHUMT00000058523.1; NONHSAT138755
Alternative gene names: XLOC_008246; linc-GPR101; ENSG00000224765.1; RP1-137H15.2; OTTHUMG00000022524.1; AL035443.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.578 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR101-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR101-1:1
3.1 lnc-GPR101-1:1
4.0 lnc-GPR101-1:1
4.1 lnc-GPR101-1:1
5.0 lnc-GPR101-1:1
5.1 lnc-ETDB-36:1
5.2 lnc-GPR101-1:1