Transcript: lnc-GPR101-1:2

Basic information

LNCipedia transcript ID: lnc-GPR101-1:2 
LNCipedia gene ID: lnc-GPR101-1
Ensembl Gene ID: ENSG00000224765
Ensembl Transcript ID: ENST00000456631
Location (hg38): chrX:137556191-137563925
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 304 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017094; ENST00000456631.1; RP1-137H15.2-001; OTTHUMT00000058522.1; NONHSAT138754
Alternative gene names: XLOC_008246; linc-GPR101; ENSG00000224765.1; RP1-137H15.2; OTTHUMG00000022524.1; AL035443.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -278.6434 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR101-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR101-1:2
3.1 lnc-GPR101-1:2
4.0 lnc-GPR101-1:2
4.1 lnc-GPR101-1:2
5.0 lnc-GPR101-1:2
5.1 lnc-ETDB-36:4
5.2 lnc-GPR101-1:2