Transcript: lnc-GPR119-1:1

Basic information

LNCipedia transcript ID: lnc-GPR119-1:1 ?
LNCipedia gene ID: lnc-GPR119-1
Location (hg19): chrX:129611043-129658231
Strand: -
Class: intergenic
Transcript size: 1646 bp
Exons: 12
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000458525; ENST00000458525.1; RP1-274L7.1-001; OTTHUMT00000058271.1; NONHSAT138520
Alternative gene names: ENSG00000229702; RP1-274L7.1; ENSG00000229702.1; OTTHUMG00000022398.1


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 4.0823 non-coding ?
CPAT coding probability 14.07% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR119-1:1 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -501.94
Randfold P-value: 0.001

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-4659a-3p 94.94
hsa-miR-4659b-3p 94.53
hsa-miR-4775 79.23
hsa-miR-582-5p 76.47
hsa-miR-600 72.43
hsa-miR-2117 70.67
hsa-miR-127-5p 70.26
hsa-miR-1305 68.21
hsa-miR-4685-5p 67.15
hsa-miR-587 66.22
hsa-miR-635 65.42
hsa-let-7f-2-3p 63.29
hsa-miR-2682-3p 62.03
hsa-miR-105-5p 61.93
hsa-miR-644b-3p 61.89
hsa-miR-4419b 61.42
hsa-miR-3618 61.28
hsa-miR-590-3p 59.92
hsa-miR-4478 59.64
hsa-miR-579 58.13
hsa-miR-4471 58.04
hsa-miR-1299 57.92
hsa-miR-1284 56.28
hsa-miR-4316 55.78
hsa-miR-129-5p 55.48
hsa-miR-340-3p 54.61
hsa-miR-3673 54.39
hsa-miR-1185-1-3p 53.46
hsa-miR-3929 53.13
hsa-miR-4700-3p 52.87
hsa-miR-1185-2-3p 52.82
hsa-miR-373-3p 52.46
hsa-miR-34a-3p 52.42
hsa-miR-1275 51.04
hsa-miR-4701-3p 50.94
hsa-miR-1262 50.92
hsa-miR-520b 50.79
hsa-miR-520c-3p 50.79
hsa-miR-3152-5p 50.78
hsa-miR-520e 50.63
hsa-miR-103a-2-5p 50.00
hsa-miR-302a-3p 50.00
hsa-miR-302b-3p 50.00
hsa-miR-302c-3p 50.00
hsa-miR-302d-3p 50.00
hsa-miR-4271 50.00
hsa-miR-4273 50.00
hsa-miR-4482-3p 50.00
hsa-miR-520a-3p 50.00

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
4.0 lnc-GPR119-1:1
3.1 lnc-GPR119-1:1
1.3 lnc-GPR119-1:1