Transcript: lnc-GPR89B-3:3

Basic information

LNCipedia transcript ID: lnc-GPR89B-3:3 
LNCipedia gene ID: lnc-GPR89B-3
Ensembl Gene ID: ENSG00000232265
Ensembl Transcript ID: ENST00000618809
Location (hg38): chr1:148162877-148186630
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT006066; ENST00000598757.1; ENST00000618809.1
Alternative gene names: ENSG00000232265.3; XXyac-YX155B6.5; ENSG00000232265.7; AC239803.1; AC239803.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.679 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR89B-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR89B-3:3
4.0 lnc-GPR89B-3:3
4.1 lnc-GPR89B-3:3
5.0 lnc-GPR89B-3:3
5.1 lnc-FCGR1A-27:5
5.2 lnc-GPR89B-3:3