Transcript: lnc-GPR89B-6:1

Basic information

LNCipedia transcript ID: lnc-GPR89B-6:1 
LNCipedia gene ID: lnc-GPR89B-6
Ensembl Gene ID: ENSG00000224481
Ensembl Transcript ID: ENST00000452996
Location (hg38): chr1:148328999-148344636
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1331 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000452996; ENST00000452996.1; RP11-495P10.3-001; OTTHUMT00000039540.1; NONHSAT006099
Alternative gene names: ENSG00000224481; RP11-495P10.3; ENSG00000224481.1; OTTHUMG00000014087.1; AC245100.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.0923 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR89B-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR89B-6:1
3.1 lnc-GPR89B-6:1
4.0 lnc-GPR89B-6:1
4.1 lnc-GPR89B-6:1
5.0 lnc-GPR89B-6:1
5.1 lnc-FCGR1A-22:1
5.2 lnc-GPR89B-6:1