Transcript: LINC02447:27

Basic information

LNCipedia transcript ID: LINC02447:27 
HGNC Gene Symbol: LINC02447    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2447
Ensembl Gene ID: ENSG00000245468
Ensembl Transcript ID: ENST00000504402
Location (hg38): chr4:7094571-7103329
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 292 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504402; TCONS_00007714; ENST00000504402.1; RP11-367J11.3-002; OTTHUMT00000358684.1
Alternative gene names: ENSG00000245562; XLOC_003872; linc-GRPEL1-1; RP11-367J11.3; ENSG00000245562.2; OTTHUMG00000159980.1; ENSG00000245468.3; LINC02447


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.5384 non-coding 
CPAT coding probability 5.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02447:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRPEL1-1:5
3.1 lnc-GRPEL1-1:5
4.0 lnc-GRPEL1-1:5
4.1 lnc-GRPEL1-1:5
5.0 lnc-GRPEL1-1:5
5.1 LINC02447:14
5.2 LINC02447:27