Transcript: TNFRSF14-AS1:27

Basic information

LNCipedia transcript ID: TNFRSF14-AS1:27 
LNCipedia gene ID: TNFRSF14-AS1
Location (hg38): chr1:2550283-2552845
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2303 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00000076
Alternative gene names: XLOC_000678; linc-HES5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.7788 non-coding 
CPAT coding probability 6.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNFRSF14-AS1:27 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HES5-1:7
3.1 lnc-HES5-1:7
4.0 lnc-HES5-1:7
4.1 lnc-HES5-1:7
5.0 lnc-HES5-1:7
5.1 TNFRSF14-AS1:12
5.2 TNFRSF14-AS1:27