Transcript: lnc-IFITM2-1:4

Basic information

LNCipedia transcript ID: lnc-IFITM2-1:4 
LNCipedia gene ID: lnc-IFITM2-1
Ensembl Gene ID: ENSG00000251661
Ensembl Transcript ID: ENST00000508004
Location (hg38): chr11:318640-319615
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508004; ENST00000508004.2; RP11-326C3.11-001; OTTHUMT00000384764.1; NONHSAT017226
Alternative gene names: ENSG00000251661; RP11-326C3.11; ENSG00000251661.2; OTTHUMG00000165541.1; ENSG00000251661.3; AC136475.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.921 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFITM2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFITM2-1:1
3.1 lnc-IFITM2-1:1
4.0 lnc-IFITM1-1:1
4.1 lnc-IFITM1-1:1
5.0 lnc-IFITM1-1:1
5.1 lnc-OR51M1-139:1
5.2 lnc-IFITM2-1:4