Transcript: lnc-IGFBP2-4:4

Basic information

LNCipedia transcript ID: lnc-IGFBP2-4:4 
LNCipedia gene ID: lnc-IGFBP2-4
Ensembl Gene ID: ENSG00000229352
Ensembl Transcript ID: ENST00000434973
Location (hg38): chr2:216799608-216805335
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 689 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434973; ENST00000434973.1; AC007563.3-001; OTTHUMT00000339425.1; NONHSAT076833
Alternative gene names: ENSG00000229352; AC007563.3; ENSG00000229352.1; OTTHUMG00000155311.1; AC007563.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.3693 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFBP2-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC007557.1.1-2:2
3.1 lnc-AC007557.1.1-2:2
4.0 lnc-AC007557.1.1-2:2
4.1 lnc-AC007557.1.1-2:2
5.0 lnc-AC007557.1.1-2:2
5.1 lnc-TMEM169-27:4
5.2 lnc-IGFBP2-4:4