Transcript: lnc-ITGA7-1:1

Basic information

LNCipedia transcript ID: lnc-ITGA7-1:1 
LNCipedia gene ID: lnc-ITGA7-1
Ensembl Gene ID: ENSG00000258921
Ensembl Transcript ID: ENST00000556606
Location (hg38): chr12:55638912-55659795
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556606.1; RP11-644F5.16-001; OTTHUMT00000410893.1; NONHSAT028665
Alternative gene names: ENSG00000258921.1; RP11-644F5.16; OTTHUMG00000170892.1; AC009779.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.6666 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGA7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGA7-1:1
4.0 lnc-ITGA7-1:1
4.1 lnc-ITGA7-1:1
5.0 lnc-ITGA7-1:1
5.1 lnc-OR6C70-6:1
5.2 lnc-ITGA7-1:1