Transcript: lnc-JUN-4:1

Basic information

LNCipedia transcript ID: lnc-JUN-4:1 
LNCipedia gene ID: lnc-JUN-4
Location (hg38): chr1:59056643-59088195
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 623 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000528; ENST00000449812; ENST00000449812.1; RP11-145M4.3-001; OTTHUMT00000023103.1; NONHSAT003548
Alternative gene names: XLOC_000850; linc-JUN-2; ENSG00000237352; RP11-145M4.3; ENSG00000237352.1; OTTHUMG00000008404.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.8067 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JUN-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JUN-4:1
3.1 lnc-JUN-4:1
4.0 lnc-JUN-4:1
4.1 lnc-JUN-4:1
5.0 lnc-JUN-4:1
5.1 lnc-C8B-33:1
5.2 lnc-JUN-4:1