Transcript: lnc-KCNC2-2:4

Basic information

LNCipedia transcript ID: lnc-KCNC2-2:4 
LNCipedia gene ID: lnc-KCNC2-2
Ensembl Gene ID: ENSG00000251138
Ensembl Transcript ID: ENST00000549905
Location (hg38): chr12:74133166-74292631
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 748 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549905; ENST00000549905.1; RP11-81H3.2-003; OTTHUMT00000405899.1; NONHSAT029496; ENST00000549905.5
Alternative gene names: ENSG00000251138; RP11-81H3.2; ENSG00000251138.2; OTTHUMG00000169693.2; ENSG00000251138.6; AC090502.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.3495 non-coding 
CPAT coding probability 4.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNC2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNC2-1:4
3.1 lnc-KCNC2-2:4
4.0 lnc-KCNC2-2:4
4.1 lnc-KCNC2-2:4
5.0 lnc-KCNC2-2:4
5.1 lnc-LRRC10-39:18
5.2 lnc-KCNC2-2:4