Transcript: lnc-KCNMB1-3:2

Basic information

LNCipedia transcript ID: lnc-KCNMB1-3:2 
LNCipedia gene ID: lnc-KCNMB1-3
Ensembl Gene ID: ENSG00000253348
Ensembl Transcript ID: ENST00000503797
Location (hg38): chr5:170757885-170767558
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 345 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503797.2; MIR4454-002; OTTHUMT00000371871.1; NONHSAT105063
Alternative gene names: ENSG00000253348.1; MIR4454; OTTHUMG00000163164.2; CTC-455F18.1; AC008514.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.8436 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 1 coding 
seqAAMLLTQSLFGGLFTRTCMKFGAVTRIGGPPLGDQSPVLLLFAP
covF1Prop0.225
orfFrame6.663500718

In stringent set: no

Locus conservation

Locus conservation?
lnc-KCNMB1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNMB1-3:2
4.0 lnc-KCNMB1-3:2
4.1 lnc-KCNMB1-3:2
5.0 lnc-KCNMB1-3:2
5.1 lnc-PDLIM7-105:2
5.2 lnc-KCNMB1-3:2