Transcript: lnc-KDM4C-1:2

Basic information

LNCipedia transcript ID: lnc-KDM4C-1:2 
LNCipedia gene ID: lnc-KDM4C-1
Ensembl Gene ID: ENSG00000225489
Ensembl Transcript ID: ENST00000443688
Location (hg38): chr9:6718810-6719370
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443688.1; RP11-390F4.3-003; OTTHUMT00000051686.1; NONHSAT130160
Alternative gene names: ENSG00000225489.1; RP11-390F4.3; OTTHUMG00000019530.1; ENSG00000225489.2; ENSG00000225489.6; AL354707.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.0844 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KDM4C-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KDM4C-1:2
4.0 lnc-KDM4C-1:2
4.1 lnc-KDM4C-1:2
5.0 lnc-KDM4C-1:2
5.1 lnc-RECK-230:21
5.2 lnc-KDM4C-1:2