Transcript: lnc-KLF17-1:1

Basic information

LNCipedia transcript ID: lnc-KLF17-1:1 
LNCipedia gene ID: lnc-KLF17-1
Ensembl Gene ID: ENSG00000230615
Ensembl Transcript ID: ENST00000434244
Location (hg38): chr1:44043928-44104975
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2644 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434244; ENST00000434244.1; RP5-1198O20.4-001; OTTHUMT00000022875.1; NONHSAT002854; ENST00000434244.5
Alternative gene names: ENSG00000230615; RP5-1198O20.4; ENSG00000230615.1; OTTHUMG00000008300.1; ENSG00000230615.2; ENSG00000230615.6; AL139220.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 89.6369 coding 
CPAT coding probability 94.38% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KLF17-1:1 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF17-1:1
3.1 lnc-KLF17-1:1
4.0 lnc-KLF17-1:1
4.1 lnc-KLF17-1:1
5.0 lnc-KLF17-1:1
5.1 lnc-CDC20-18:10
5.2 lnc-KLF17-1:1