Transcript: lnc-KMT5A-1:16

Basic information

LNCipedia transcript ID: lnc-KMT5A-1:16 
LNCipedia gene ID: lnc-KMT5A-1
Ensembl Gene ID: ENSG00000256092
Ensembl Transcript ID: ENST00000602918
Location (hg38): chr12:123363868-123365787
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1920 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT031584; ENST00000602918.1
Alternative gene names: ENSG00000256092.2; hsa-mir-8072; RP13-942N8.1; AC137767.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.1167 non-coding 
CPAT coding probability 21.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KMT5A-1:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SETD8-1:3
4.0 lnc-SETD8-1:3
4.1 lnc-SETD8-1:3
5.0 lnc-SETD8-1:3
5.1 lnc-KMT5A-1:2
5.2 lnc-KMT5A-1:16