Transcript: lnc-KRTAP5-6-1:1

Basic information

LNCipedia transcript ID: lnc-KRTAP5-6-1:1 
LNCipedia gene ID: lnc-KRTAP5-6-1
Ensembl Gene ID: ENSG00000227306
Ensembl Transcript ID: ENST00000436539
Location (hg38): chr11:1688297-1689056
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436539; ENST00000436539.1; AP006285.6-001; OTTHUMT00000127921.1; NONHSAT017417
Alternative gene names: ENSG00000227306; AP006285.6; ENSG00000227306.1; OTTHUMG00000057556.1; AP006285.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.7371 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRTAP5-6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KRTAP5-6-1:1
3.1 lnc-KRTAP5-6-1:1
4.0 lnc-KRTAP5-6-1:1
4.1 lnc-KRTAP5-6-1:1
5.0 lnc-KRTAP5-6-1:1
5.1 lnc-OR51M1-92:1
5.2 lnc-KRTAP5-6-1:1