Transcript: lnc-LONP2-6:1

Basic information

LNCipedia transcript ID: lnc-LONP2-6:1 
LNCipedia gene ID: lnc-LONP2-6
Location (hg38): chr16:48623436-48744642
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000568150.1; RP11-42I10.1-001; OTTHUMT00000426651.1; NONHSAT142351
Alternative gene names: ENSG00000260086.1; RP11-42I10.1; OTTHUMG00000174455.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -195.547 non-coding 
CPAT coding probability 19.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LONP2-6:1 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LONP2-6:1
4.0 lnc-LONP2-6:1
4.1 lnc-LONP2-6:1
5.0 lnc-LONP2-6:1
5.1 lnc-ADGRG1-167:1
5.2 lnc-LONP2-6:1