Transcript: lnc-LONP2-6:2

Basic information

LNCipedia transcript ID: lnc-LONP2-6:2 
LNCipedia gene ID: lnc-LONP2-6
Ensembl Gene ID: ENSG00000260086
Ensembl Transcript ID: ENST00000564212
Location (hg38): chr16:48623447-48673478
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 854 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564212.1; RP11-42I10.1-002; OTTHUMT00000426652.1; NONHSAT142352
Alternative gene names: ENSG00000260086.1; RP11-42I10.1; OTTHUMG00000174455.1; ENSG00000260086.2; AC007611.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.1512 non-coding 
CPAT coding probability 13.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LONP2-6:2 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LONP2-6:2
4.0 lnc-LONP2-6:2
4.1 lnc-LONP2-6:2
5.0 lnc-LONP2-6:2
5.1 lnc-ADGRG1-167:8
5.2 lnc-LONP2-6:2