Transcript: lnc-LRRK1-2:2

Basic information

LNCipedia transcript ID: lnc-LRRK1-2:2 
LNCipedia gene ID: lnc-LRRK1-2
Ensembl Gene ID: ENSG00000259182
Ensembl Transcript ID: ENST00000557903
Location (hg38): chr15:101168530-101170821
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 389 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557903.1; RP11-424I19.2-002; OTTHUMT00000416800.1; NONHSAT051154; ENST00000557903.5
Alternative gene names: ENSG00000259182.1; RP11-424I19.2; OTTHUMG00000172091.1; ENSG00000259182.5; AC019254.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.1546 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRK1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRK1-2:2
4.0 lnc-LRRK1-2:2
4.1 lnc-LRRK1-2:2
5.0 lnc-LRRK1-2:2
5.1 lnc-OR4F15-12:2
5.2 lnc-LRRK1-2:2