Transcript: lnc-LSMD1-1:1

Basic information

LNCipedia transcript ID: lnc-LSMD1-1:1 ?
LNCipedia gene ID: lnc-LSMD1-1
Location (hg19): chr17:7771136-7777031
Strand: -
Class: intronic
Transcript size: 2849 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000507426
Alternative gene names: ENSG00000248291


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -37.1788 non-coding ?
CPAT coding probability 21.57% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-LSMD1-1:1 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -779.65
Randfold P-value: 0.001

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-765 80.40
hsa-miR-5703 77.56
hsa-miR-4434 77.00
hsa-miR-608 76.01
hsa-miR-3121-5p 76.00
hsa-miR-4776-3p 73.48
hsa-miR-744-3p 71.31
hsa-miR-5583-3p 70.83
hsa-miR-198 70.21
hsa-miR-4516 69.86
hsa-miR-1253 68.30
hsa-miR-4515 68.29
hsa-miR-4740-5p 67.76
hsa-miR-4428 67.55
hsa-miR-4651 66.72
hsa-miR-4738-3p 63.58
hsa-miR-4459 63.52
hsa-miR-330-5p 63.27
hsa-miR-5196-5p 61.07
hsa-miR-3169 60.61
hsa-miR-4766-5p 59.41
hsa-miR-3921 58.50
hsa-miR-665 57.74
hsa-miR-5011-3p 57.08
hsa-miR-4747-5p 57.04
hsa-miR-134 56.67
hsa-miR-646 56.51
hsa-miR-5590-5p 56.39
hsa-miR-3153 56.20
hsa-miR-4691-5p 56.12
hsa-miR-3616-3p 55.77
hsa-miR-622 54.86
hsa-miR-615-5p 54.65
hsa-miR-4314 54.36
hsa-miR-5004-3p 53.89
hsa-miR-4676-5p 53.34
hsa-miR-4653-5p 52.86
hsa-miR-877-5p 52.69
hsa-miR-1276 52.13
hsa-miR-3118 51.35
hsa-miR-1322 50.70
hsa-miR-4436b-3p 50.55
hsa-miR-4319 50.00

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-LSMD1-1:1
3.1 lnc-LSMD1-1:1
4.0 lnc-LSMD1-1:1