Transcript: lnc-MAP3K9-3:17

Basic information

LNCipedia transcript ID: lnc-MAP3K9-3:17 
LNCipedia gene ID: lnc-MAP3K9-3
Ensembl Gene ID: ENSG00000259146
Ensembl Transcript ID: ENST00000555771
Location (hg38): chr14:71292729-71321814
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 509 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555771.2
Alternative gene names: ENSG00000259146.3; RP1-261D10.2; AC005476.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -377.2599 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K9-3:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MAP3K9-3:17
4.1 lnc-MAP3K9-3:17
5.0 lnc-MAP3K9-3:17
5.1 lnc-ABCD4-42:11
5.2 lnc-MAP3K9-3:17