Transcript: lnc-MEF2A-9:2

Basic information

LNCipedia transcript ID: lnc-MEF2A-9:2 
LNCipedia gene ID: lnc-MEF2A-9
Ensembl Gene ID: ENSG00000259363
Ensembl Transcript ID: ENST00000560059
Location (hg38): chr15:99807059-99839065
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560059.5
Alternative gene names: ENSG00000259363.5; CTD-2054N24.2; AC090825.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 46.8884 non-coding 
CPAT coding probability 21.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MEF2A-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTD-2054N24.2.1-6:4
4.1 lnc-CTD-2054N24.2.1-6:4
5.0 lnc-CTD-2054N24.2.1-6:4
5.1 lnc-ARRDC4-51:2
5.2 lnc-MEF2A-9:2