Transcript: lnc-METTL23-1:1

Basic information

LNCipedia transcript ID: lnc-METTL23-1:1 ?
LNCipedia gene ID: lnc-METTL23-1
Location (hg19): chr17:74730199-74733413
Strand: +
Class: sense-overlapping
Transcript size: 2532 bp
Exons: 3
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000508921
Alternative gene names: ENSG00000251282


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 111 coding ?
Peptide Confidence
SYGRPPPDVEGMTSLK 100%
VGDVYIPR 97.6588628762542%
VGDVYIPR 95.4074074074074%
VGDVYIPR 99.4594594594595%
VGDVYIPR 100%
VGDVYIPR 97.4358974358974%
VGDVYIPR 95.6521739130435%
VGDVYIPR 96.9230769230769%
VGDVYIPR 98.2142857142857%
VGDVYIPR 91.7808219178082%
VGDVYIPR 96.4285714285714%
VGDVYIPR 98.0769230769231%
VGDVYIPR 99.4871794871795%
VGDVYIPR 99.4152046783626%
SYGRPPPDVEGMTSLK 97.7272727272727%
SYGRPPPDVEGMTSLK 96.8253968253968%
VGDVYIPR 95.0819672131148%
SYGRPPPDVEGMTSLK 95.1219512195122%
VGDVYIPR 96.7213114754098%
VGDVYIPR 99.936628643853%
VGDVYIPR 91.8918918918919%
SYGRPPPDVEGMTSLK 97.3684210526316%
VGDVYIPR 97.8723404255319%
SYGRPPPDVEGMTSLK 98.7654320987654%
VGDVYIPR 97.2222222222222%
VGDVYIPR 99.2647058823529%
VGDVYIPR 98.1132075471698%
VGDVYIPR 98.1481481481482%
VGDVYIPR 98.5185185185185%
SYGRPPPDVEGMTSLK 94.1176470588235%
VGDVYIPR 97.2527472527473%
VGDVYIPR 96.7391304347826%
VDNLTYR 92.2279792746114%
VGDVYIPR 91.005291005291%
SYGRPPPDVEGMTSLK 91.0714285714286%
VGDVYIPR 99.3174061433447%
VGDVYIPR 99.3197278911565%
VGDVYIPR 97.6635514018692%
VGDVYIPR 97.4193548387097%
VGDVYIPR 95.6989247311828%
VGDVYIPR 99.3421052631579%
VDNLTYR 94.0397350993377%
VDNLTYRTSPDTLR 100%
VGDVYIPR 97.6744186046512%
VGDVYIPR 98.0132450331126%
VGDVYIPR 92.0529801324503%
VGDVYIPR 91.9463087248322%
VGDVYIPR 98%
VGDVYIPR 93.5441370223979%
VGDVYIPR 95.5321944809461%
VGDVYIPR 98.9189189189189%
VGDVYIPR 98.8721804511278%
VGDVYIPR 90%
SYGRPPPDVEGMTSLK 97.2727272727273%
VGDVYIPR 97.6019184652278%
VGDVYIPR 99.3736951983299%
VGDVYIPR 98.0968858131488%
VGDVYIPR 99.5652173913043%
SYGRPPPDVEGMTSLK 99.1397849462366%
VGDVYIPR 93.6781609195402%
VGDVYIPR 99.2424242424242%
VGDVYIPR 99.1967871485944%
VGDVYIPR 93.8775510204082%
VGDVYIPR 93.6%
VGDVYIPR 93.9759036144578%
VGDVYIPR 98.125%
VGDVYIPR 98.3388704318937%
VGDVYIPR 93.0693069306931%
VGDVYIPR 93.0434782608696%
VGDVYIPR 99.4324631101021%
VGDVYIPR 90.0970873786408%
VGDVYIPR 99.6138996138996%
VGDVYIPR 91.2941176470588%
VGDVYIPR 91.869918699187%
VGDVYIPR 97.877358490566%
VGDVYIPR 97.2789115646258%
VGDVYIPR 97.2972972972973%
VGDVYIPR 97.6047904191617%
VDNLTYR 94.2857142857143%
VGDVYIPR 97.4025974025974%
SYGRPPPDVEGMTSLK 96.4285714285714%
TSPDTLRR 97.3244147157191%
SYGRPPPDVEGMTSLK 97.907949790795%
VGDVYIPR 98.1012658227848%
VGDVYIPR 97.029702970297%
VGDVYIPR 99.4609164420485%
VGDVYIPR 97.9827089337176%
VGDVYIPR 98.8304093567251%
TSPDTLRR 98.0707395498392%
VGDVYIPR 98.7421383647799%
SYGRPPPDVEGMTSLK 97.4160206718346%
SYGRPPPDVEGMTSLK 93.7823834196891%
VGDVYIPR 99.2863514719001%
VGDVYIPR 99.9139414802065%
VGDVYIPR 94.6843853820598%
VDNLTYR 90.6832298136646%
VGDVYIPR 96.3927855711423%
VGDVYIPR 97.6%
VGDVYIPR 98.5042735042735%
VGDVYIPR 97.3969631236443%
VGDVYIPR 98.9384288747346%
VDNLTYR 90.9090909090909%
VGDVYIPR 98.0982567353407%
VGDVYIPR 98.0952380952381%
VGDVYIPR 99.6791443850267%
VGDVYIPR 98.7138263665595%
VGDVYIPR 95.7761351636748%
VGDVYIPR 98.8584474885845%
VGDVYIPR 99.7409326424871%
VGDVYIPR 97.3544973544974%
VDNLTYR 98.0582524271845%
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 67.4303 coding ?
CPAT coding probability 9.96% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
lnc-METTL23-1:1 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -738.1
Randfold P-value: 0.006

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-224-3p 92.62
hsa-miR-522-3p 91.76
hsa-miR-4687-3p 91.25
hsa-miR-548u 78.64
hsa-miR-3679-3p 76.18
hsa-miR-513a-3p 76.02
hsa-miR-513c-3p 75.10
hsa-miR-4666a-5p 69.90
hsa-miR-488-3p 69.81
hsa-miR-2113 68.27
hsa-miR-628-5p 66.72
hsa-miR-4742-3p 66.10
hsa-miR-20b-3p 65.99
hsa-miR-5100 64.96
hsa-miR-541-5p 64.21
hsa-miR-4778-5p 63.19
hsa-miR-455-5p 61.18
hsa-miR-3691-3p 60.24
hsa-miR-769-5p 60.08
hsa-miR-3924 58.29
hsa-miR-125a-3p 58.12
hsa-miR-493-3p 57.80
hsa-miR-578 57.48
hsa-miR-4724-3p 56.89
hsa-miR-3942-3p 54.97
hsa-miR-4446-5p 54.35
hsa-miR-3688-3p 54.11
hsa-miR-216b 53.34
hsa-miR-4435 52.95
hsa-miR-942 52.57
hsa-miR-378a-5p 52.49
hsa-miR-129-1-3p 52.22
hsa-miR-129-2-3p 52.22
hsa-miR-32-3p 51.94
hsa-miR-3152-5p 51.87
hsa-miR-512-3p 50.90

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-METTL23-1:1
3.1 lnc-METTL23-1:1
4.0 lnc-METTL23-1:1