Transcript: lnc-MFSD9-5:1

Basic information

LNCipedia transcript ID: lnc-MFSD9-5:1 
LNCipedia gene ID: lnc-MFSD9-5
Ensembl Gene ID: ENSG00000236141
Ensembl Transcript ID: ENST00000447761
Location (hg38): chr2:103865746-103869688
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003347; ENST00000447761; ENST00000447761.1; AC013727.2-001; OTTHUMT00000329209.1; NONHSAT072885
Alternative gene names: XLOC_002234; linc-MFSD9-8; ENSG00000236141; AC013727.2; ENSG00000236141.1; OTTHUMG00000153043.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.3149 non-coding 
CPAT coding probability 8.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFSD9-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MFSD9-4:1
3.1 lnc-MFSD9-5:1
4.0 lnc-MFSD9-5:1
4.1 lnc-MFSD9-5:1
5.0 lnc-MFSD9-5:1
5.1 lnc-AFF3-63:2
5.2 lnc-MFSD9-5:1