Transcript: lnc-MFSD9-5:2

Basic information

LNCipedia transcript ID: lnc-MFSD9-5:2 
LNCipedia gene ID: lnc-MFSD9-5
Ensembl Gene ID: ENSG00000232597
Ensembl Transcript ID: ENST00000455716
Location (hg38): chr2:103856970-103880209
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003346; ENST00000455716; ENST00000455716.1; AC013727.1-001; OTTHUMT00000329211.1; NONHSAT072884
Alternative gene names: XLOC_002233; linc-MFSD9-1; ENSG00000232597; AC013727.1; ENSG00000232597.1; OTTHUMG00000153045.1; ENSG00000232597.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.09 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFSD9-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MFSD9-5:1
3.1 lnc-MFSD9-6:1
4.0 lnc-MFSD9-5:2
4.1 lnc-MFSD9-5:2
5.0 lnc-MFSD9-5:2
5.1 lnc-AFF3-63:1
5.2 lnc-MFSD9-5:2