Transcript: lnc-MPPE1-1:7

Basic information

LNCipedia transcript ID: lnc-MPPE1-1:7 
LNCipedia gene ID: lnc-MPPE1-1
Location (hg38): chr18:11926980-11947775
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1707 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000036933.1|ENCT00000195672.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 34.7183 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPPE1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MPPE1-1:7
5.0 lnc-MPPE1-1:7
5.1 lnc-SMAD2-272:5
5.2 lnc-MPPE1-1:7