Transcript: lnc-N6AMT1-1:1

Basic information

LNCipedia transcript ID: lnc-N6AMT1-1:1 
LNCipedia gene ID: lnc-N6AMT1-1
Location (hg38): chr21:28444549-28674848
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 900 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433310; ENST00000433310.1; AF131217.1-001; OTTHUMT00000171732.1; NONHSAT081599
Alternative gene names: ENSG00000232855; AF131217.1; ENSG00000232855.1; OTTHUMG00000078747.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.2537 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-N6AMT1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-N6AMT1-1:1
3.1 lnc-N6AMT1-1:1
4.0 lnc-N6AMT1-1:1
4.1 lnc-N6AMT1-1:1
5.0 lnc-N6AMT1-1:1
5.1 lnc-N6AMT1-1:1
5.2 lnc-N6AMT1-1:1