Transcript: lnc-NAV3-2:4

Basic information

LNCipedia transcript ID: lnc-NAV3-2:4 
LNCipedia gene ID: lnc-NAV3-2
Ensembl Gene ID: ENSG00000258084
Ensembl Transcript ID: ENST00000548963
Location (hg38): chr12:78396607-78482809
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 693 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548963.1; RP11-754N21.1-001; OTTHUMT00000406850.1; NONHSAT029629
Alternative gene names: ENSG00000258084.1; RP11-754N21.1; OTTHUMG00000170009.1; ENSG00000258084.5; AC128707.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.9548 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAV3-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAV3-2:4
4.0 lnc-NAV3-2:4
4.1 lnc-NAV3-2:4
5.0 lnc-NAV3-2:4
5.1 lnc-SYT1-12:4
5.2 lnc-NAV3-2:4