Transcript: lnc-NECAP2-1:2

Basic information

LNCipedia transcript ID: lnc-NECAP2-1:2 
LNCipedia gene ID: lnc-NECAP2-1
Location (hg38): chr1:16520694-16521808
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 342 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000157; ENST00000452795; ENST00000452795.1; RP4-798A10.4-001; OTTHUMT00000007047.1; NONHSAT001132
Alternative gene names: XLOC_000063; linc-CROCC-3; ENSG00000224174; RP4-798A10.4; ENSG00000224174.1; OTTHUMG00000002490.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5151 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NECAP2-1:2 no no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int
  2. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL355149.1-1:1
3.1 lnc-AL355149.1-1:1
4.0 lnc-AL355149.1-1:1
4.1 lnc-AL355149.1-1:1
5.0 lnc-AL355149.1-1:1
5.1 lnc-SZRD1-8:1
5.2 lnc-NECAP2-1:2