Transcript: lnc-NECAP2-1:3

Basic information

LNCipedia transcript ID: lnc-NECAP2-1:3 
LNCipedia gene ID: lnc-NECAP2-1
Ensembl Gene ID: ENSG00000224174
Ensembl Transcript ID: ENST00000452795
Location (hg38): chr1:16520694-16521796
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT001133; ENST00000452795.2
Alternative gene names: ENSG00000224174.2; RP4-798A10.4; AL137802.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5151 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NECAP2-1:3 no no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int
  2. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL355149.1-1:3
4.0 lnc-AL355149.1-1:3
4.1 lnc-AL355149.1-1:3
5.0 lnc-AL355149.1-1:3
5.1 lnc-SZRD1-8:2
5.2 lnc-NECAP2-1:3