Transcript: lnc-NECAP2-2:2

Basic information

LNCipedia transcript ID: lnc-NECAP2-2:2 
LNCipedia gene ID: lnc-NECAP2-2
Ensembl Gene ID: ENSG00000261135
Ensembl Transcript ID: ENST00000562878
Location (hg38): chr1:16514645-16515754
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1110 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562878.1; RP4-798A10.7-001; OTTHUMT00000430936.1
Alternative gene names: ENSG00000261135.1; RP4-798A10.7; OTTHUMG00000175735.1; AL137802.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.8394 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NECAP2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL355149.1-2:1
4.0 lnc-AL355149.1-2:1
4.1 lnc-AL355149.1-2:1
5.0 lnc-AL355149.1-2:1
5.1 lnc-SZRD1-7:2
5.2 lnc-NECAP2-2:2