Transcript: lnc-NNT-2:3

Basic information

LNCipedia transcript ID: lnc-NNT-2:3 
LNCipedia gene ID: lnc-NNT-2
Location (hg38): chr5:43518273-43518668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 396 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT147330; FPKM1_group_25300_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.5865 non-coding 
CPAT coding probability 13.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NNT-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NNT-2:3
4.0 lnc-NNT-2:3
4.1 lnc-NNT-2:3
5.0 lnc-NNT-2:3
5.1 lnc-CARD6-52:8
5.2 lnc-NNT-2:3