Transcript: lnc-NPAP1-7:3

Basic information

LNCipedia transcript ID: lnc-NPAP1-7:3 
LNCipedia gene ID: lnc-NPAP1-7
Location (hg38): chr15:24347411-24358057
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 328 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00023867
Alternative gene names: XLOC_011177; linc-C15orf2-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.4886 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPAP1-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C15orf2-6:2
3.1 lnc-C15orf2-7:2
4.0 lnc-C15orf2-7:2
4.1 lnc-C15orf2-7:2
5.0 lnc-C15orf2-7:2
5.1 lnc-SNRPN-9:3
5.2 lnc-NPAP1-7:3