Transcript: lnc-NTM-2:1

Basic information

LNCipedia transcript ID: lnc-NTM-2:1 
LNCipedia gene ID: lnc-NTM-2
Ensembl Gene ID: ENSG00000237612
Ensembl Transcript ID: ENST00000441638
Location (hg38): chr11:131234538-131251816
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019160; ENST00000441638; ENST00000441638.1; AP002856.7-001; OTTHUMT00000316004.1; NONHSAT025167
Alternative gene names: XLOC_009339; linc-NTM-2; ENSG00000237612; AP002856.7; ENSG00000237612.1; OTTHUMG00000150045.1; AP002856.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.0215 non-coding 
CPAT coding probability 4.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTM-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NTM-2:1
3.1 lnc-NTM-2:1
4.0 lnc-NTM-2:1
4.1 lnc-NTM-2:1
5.0 lnc-NTM-2:1
5.1 lnc-JAM3-18:1
5.2 lnc-NTM-2:1