Transcript: lnc-NXPE2-5:1

Basic information

LNCipedia transcript ID: lnc-NXPE2-5:1 
LNCipedia gene ID: lnc-NXPE2-5
Ensembl Gene ID: ENSG00000255689
Ensembl Transcript ID: ENST00000306533
Location (hg38): chr11:115582297-115600339
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 376 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000306533; ENST00000306533.8; RP11-136I14.5-001; OTTHUMT00000398935.1; NONHSAT024312
Alternative gene names: ENSG00000255689; RP11-136I14.5; ENSG00000255689.1; OTTHUMG00000168240.1; AP003174.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.6189 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPE2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM55B-5:1
3.1 lnc-FAM55B-5:1
4.0 lnc-FAM55B-5:1
4.1 lnc-FAM55B-5:1
5.0 lnc-FAM55B-5:1
5.1 lnc-PTS-53:1
5.2 lnc-NXPE2-5:1