Transcript: lnc-OR13A1-1:1

Basic information

LNCipedia transcript ID: lnc-OR13A1-1:1 
LNCipedia gene ID: lnc-OR13A1-1
Ensembl Gene ID: ENSG00000227683
Ensembl Transcript ID: ENST00000422807
Location (hg38): chr10:45164228-45181427
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422807; ENST00000422807.1; RP11-445N18.5-001; OTTHUMT00000047776.1; NONHSAT013087
Alternative gene names: ENSG00000227683; RP11-445N18.5; ENSG00000227683.1; OTTHUMG00000018077.1; AL358394.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.9036 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR13A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR13A1-1:1
3.1 lnc-OR13A1-1:1
4.0 lnc-OR13A1-1:1
4.1 lnc-OR13A1-1:1
5.0 lnc-OR13A1-1:1
5.1 lnc-LRRC18-71:1
5.2 lnc-OR13A1-1:1