Transcript: lnc-OR2T29-1:1

Basic information

LNCipedia transcript ID: lnc-OR2T29-1:1 
LNCipedia gene ID: lnc-OR2T29-1
Ensembl Gene ID: ENSG00000229255
Ensembl Transcript ID: ENST00000450847
Location (hg38): chr1:248484245-248485484
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 967 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450847.1; RP11-407H12.8-001; OTTHUMT00000099211.1; NONHSAT139946
Alternative gene names: ENSG00000229255.1; RP11-407H12.8; OTTHUMG00000041417.1; AC138089.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.3366 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR2T29-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR2T29-1:1
4.0 lnc-OR2T29-1:1
4.1 lnc-OR2T29-1:1
5.0 lnc-OR2T29-1:1
5.1 lnc-LYPD8-8:3
5.2 lnc-OR2T29-1:1