Transcript: lnc-PANK1-2:2

Basic information

LNCipedia transcript ID: lnc-PANK1-2:2 
LNCipedia gene ID: lnc-PANK1-2
Ensembl Gene ID: ENSG00000240996
Ensembl Transcript ID: ENST00000455699
Location (hg38): chr10:89694295-89697928
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 667 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455699.1; RP11-80H5.7-001; OTTHUMT00000049326.1
Alternative gene names: ENSG00000240996.1; RP11-80H5.7; OTTHUMG00000018723.1; AL157400.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.954 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANK1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PANK1-2:2
4.0 lnc-PANK1-2:2
4.1 lnc-PANK1-2:2
5.0 lnc-PANK1-2:2
5.1 lnc-HTR7-17:12
5.2 lnc-PANK1-2:2