Transcript: lnc-PANK1-2:6

Basic information

LNCipedia transcript ID: lnc-PANK1-2:6 
LNCipedia gene ID: lnc-PANK1-2
Ensembl Gene ID: ENSG00000235100
Ensembl Transcript ID: ENST00000449882
Location (hg38): chr10:89667181-89699671
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1298 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT139988; ENST00000449882.2
Alternative gene names: ENSG00000235100.3; RP11-80H5.9; AL157400.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5779 non-coding 
CPAT coding probability 7.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANK1-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PANK1-2:6
4.0 lnc-PANK1-2:6
4.1 lnc-PANK1-2:6
5.0 lnc-PANK1-2:6
5.1 lnc-HTR7-17:10
5.2 lnc-PANK1-2:6