Transcript: lnc-PCM1-4:6

Basic information

LNCipedia transcript ID: lnc-PCM1-4:6 
LNCipedia gene ID: lnc-PCM1-4
Ensembl Gene ID: ENSG00000253671
Ensembl Transcript ID: ENST00000520646
Location (hg38): chr8:17808941-17820868
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 667 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520646; ENST00000520646.1; RP11-806O11.1-001; OTTHUMT00000374851.1; NONHSAT125300
Alternative gene names: ENSG00000253671; RP11-806O11.1; ENSG00000253671.1; OTTHUMG00000163706.1; AC027117.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.9382 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCM1-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCM1-3:5
3.1 lnc-PCM1-4:6
4.0 lnc-PCM1-4:6
4.1 lnc-PCM1-4:6
5.0 lnc-PCM1-4:6
5.1 lnc-PCM1-4:6
5.2 lnc-PCM1-4:6