Transcript: lnc-PDGFA-17:12

Basic information

LNCipedia transcript ID: lnc-PDGFA-17:12 
LNCipedia gene ID: lnc-PDGFA-17
Location (hg38): chr7:135882-149453
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3837 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000242474.1|ENCT00000407685.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 56.2359 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFA-17:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC145676.2.1-4:23
5.0 lnc-AC145676.2.1-4:23
5.1 lnc-PRKAR1B-17:12
5.2 lnc-PDGFA-17:12