Transcript: lnc-PDGFA-6:1

Basic information

LNCipedia transcript ID: lnc-PDGFA-6:1 
LNCipedia gene ID: lnc-PDGFA-6
Ensembl Gene ID: ENSG00000282572
Ensembl Transcript ID: ENST00000632586
Location (hg38): chr7:31390-35489
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 484 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000632586.1
Alternative gene names: ENSG00000282572.2; RP11-482G13.1; AC215522.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -59.569 non-coding 
CPAT coding probability 14.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFA-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC145676.2.1-6:5
4.1 lnc-AC145676.2.1-6:5
5.0 lnc-AC145676.2.1-6:5
5.1 lnc-PRKAR1B-26:1
5.2 lnc-PDGFA-6:1